1. Andras, S.C.; Power, J.B.; Cocking, E.C.; Davey, M.R. Strategies for signal amplification in nucleic acid detection. Mol. Biotechnol. 2001, 19, 29-44.

2. Schweitzer, B.; Kingsmore, S. Combining nucleic acid amplification and detection. Curr. Opin. Biotechnol. 2001, 12, 21-27.

3. Barany, F. Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc. Natl. Acad. Sci. U. S. A. 1991, 88, 189-193.

4. Barany, F. The ligase chain reaction in a PCR world. PCR Methods Appl. 1991, 4, 5-16.

5. Landegren, U.; Kaiser, R.; Sanders, J.; Hood, L. A ligase mediated gene detection technique. Science 1988, 241, 1077-1080.

6. Wiedmann, M.; Wilson, W.J.; Czajka, J.; Luo, J.; Barany, F.; Batt, C.A. Ligase chain reaction (LCR)—Overview and applications. PCR Methods Appl. 1994, 4, S51-S64.

7. Benjamin, W.H.; Smith, K.R.; Waites, K.B. Ligase chain reaction. Methods Mol. Biol. 2003, 226, 135-149.

8. Besmer, P.; Miller, R.J.; Caruthers, M.H.; Kumar, A.; Minamoto, K.; Van de Sande, J.H. Studies on polynucleotides: CXVII. Hybridization of polynucleotides with tyrosinase transfer RNA sequences to the r-strand of phi80psu+DNA. J. Mol. Biol. 1972, 72, 503-522.

9. Lehman, I.R. DNA ligase: Structure, mechanism and function. Science 1974, 186, 790-797.

10. Wu, D.Y.; Wallace, R.B. The ligation amplification reaction (LAR)—Amplification of specific DNA sequences using sequential rounds of template dependent ligation. Genomics 1989, 4, 560-569.

11. Wabuyele, M.B.; Farquar, H.; Stryjewski, W.; Hammer, R.P.; Soper, S.A.; Cheng, Y.W.; Barany, F. Approaching real-time molecular diagnostics: Single-pair fluorescence resonance energy transfer (spFRET) detection for the analysis of low abundant point mutations in K-ras oncogenes. J. Am. Chem. Soc. 2003, 125, 6937-6945.

12. Simms, I.; Eastick, K.; Mallinson, H.; Thomas, K.; Gokhale, R.; Hay, P.; Herring, A.; Rogers, P.A. Associations between Mycoplasma genitalium, Chlamydia trachomatis and pelvic inflammatory disease. J. Clin. Pathol. 2003, 56, 616-618.

13. Jou, C.; Rhoads, J.; Bouma, S.; Ching, S.; Hoijer, J.; Schroeder-Poliak, P.; Zaun, P.; Smith, S.; Richards, S.; Caskey, C.T. Deletion detection in the dystrophin gene by multiplex gap ligase chain reaction and immunochromato-graphic strip technology. Hum. Mutat. 1995, 5, 86-93.

14. Berger, D.H.; Chang, H.; Wood, M.; Huang, L.; Heath, C.W.; Lehman, T.; Ruggeri, B.A. Mutational activation of K-ras in non-neoplastic exocrine pancreatic lesions in relation to cigarette smoking status. Cancer 1999, 85, 326-332.

15. Fang, P.; Bouma, S.; Jou, C.; Gordon, J.; Beaudet, A.L. Simultaneous analysis of mutant and normal alleles for multiple cystic fibrosis mutations by the ligase chain reaction. Hum. Mutat. 1995, 6, 144-151.

16. Blocker, M.E.; Krysiak, R.G.; Behets, F.; Cohen, M.S.; Hobbs, M.M. Quantification of Chlamydia trachomatis elementary bodies in urine by ligase chain reaction. J. Clin. Microbiol. 2002, 40, 3631-3634.

17. Leckie, G.W.; Erickson, D.D.; He, O.; Facey, I.E.; Lin, B.C.; Cao, J.; Halaka, F.G. Method for reduction of inhibition in a Mycobacterium tuberculosis specific ligase chain reaction DNA amplification assay. J. Clin. Microbiol. 1998, 36, 764-767.

18. Notomi, T.; Ikeda, Y.; Okadome, A.; Nagayama, A. The inhibitory effect of phosphate on the ligase chain reaction used for detecting Chlamydia trachomatis. J. Clin. Pathol. 1998, 51, 306-308.

19. Nathanson, D.R.; Culliford, A.T.; Shia, J.; Chen, B.; D'Alesisio, M.; Zeng, Z.S.; Nash, G.M.; Gerald, W.; Barany, F.; Paty, P.B. HER 2/neu expression and gene amplification in colon cancer. Int. J. Cancer 2003, 105, 796-802.

20. Marshall, R.L.; Laffler, T.G.; Cerney, M.B.; Sustachek, J.C.; Kratochvil, J.D.; Morgan, R.L. Detection of HCV RNA by the asymmetric gap ligase chain reaction. PCR Methods Appl. 1994, 4, 80-84.

21. Yajima, R. Development of novel clinical tests and their contribution to laboratory diagnosis-ligase chain reaction. Rinsho Byori 1997, 45, 4146.

22. Abravaya, K.; Carrino, J.J.; Muldoon, S.; Lee, H.H. Detection of point mutations with a modified ligase chain reaction (Gap-LCR). Nucleic Acids Res. 1995, 23, 675682.

23. Harden, S.V.; Thomas, D.C.; Benoit, N.; Minhas, K.; Westra, W.H.; Califano, J.A.; Koch, W.; Sidransky, D. Real-time gap ligase chain reaction: A rapid semiquantitative assay for detecting p53 mutation at low levels in surgical margins and lymph nodes from resected lung and head and neck tumors. Clin. Cancer Res. 2004, 10, 23792385.

24. Koumans, E.H.; Johnson, R.E.; Knapp, J.S.; St Louis, M.E. Laboratory testing for Neisseria gonorrhoeae by recently introduced nonculture tests: A performance review with clinical and public health considerations. Clin. Infect. Dis. 1998, 27, 1171-1180.

25. Van Doornum, G.J.; Schools, L.M.; Pijl, A.; Cairo, I.; Buimer, M.; Bruisten, S. Comparison between the LCx probe system and the COBAS AMPLICOR system for detection of Chlamydia trachomatis and Neisseria gonor-rhoeae infections in patients attending a clinic for treatment of sexually transmitted diseases in Amsterdam, The Netherlands. J. Clin. Microbiol. 2001, 39, 829-835.

26. Black, C.M.; Marrazzo, J.; Johnson, R.E.; Hook, E.W., III; Jones, R.B.; Green, T.A.; Schachter, J.; Stamm, W.E.; Bolan, G.; St Louis, M.E.; Martin, D.H. Head-to-head multicenter comparison of DNA probe and nucleic acid amplification tests for Chlamydia trachomatis infection in women performed with an improved reference standard. J. Clin. Microbiol. 2002, 40, 3757-3763.

27. Watson, E.J.; Templeton, A.; Russell, I.; Paavonen, J.; Mardh, P.A.; Stary, A.; Pederson, B.S. The accuracy and efficacy of screening tests for Chlamydia trachomatis: A systematic review. J. Med. Microbiol. 2002, 51, 10211031.

28. Land, S.; Tabrizi, S.; Gust, A.; Johnson, E.; Garland, S.;

Dax, E.M. External quality assessment program for 35. Chlamydia trachomatis diagnostic testing by nucleic acid amplification assays. J. Clin. Microbiol. 2002, 40, 28932896.

29. Moncada, J.; Schachter, J.; Hook, E.W., III; Ferrero, D.; 36. Gaydos, C.; Quinn, T.C.; Willis, D.; Weissfeld, A.; Martin,

D.H. The effect of urine testing in evaluations of the sensitivity of the Gen-Probe Aptima Combo 2 assay on endocervical swabs for Chlamydia trachomatis and Neisseria gonorrhoeae: The infected patient standard reduces sensitivity of single site evaluation. Sex. Transm. 37. Dis. 2004, 31, 273-277.

30. Kleppe, K.; van de Sande, J.H.; Khorana, H.G. Polynucleotide ligase catalysed joining of deoxyribo-oligonucleo-tides on ribopolynucleotide templates. Proc. Natl. Acad.

31. Hsuih, T.C.H.; Park, Y.P.; Zaretsky, C.; Wu, F.; Tyagi, S.; Russell, F.; Sperling, R.; Zhang, D.Y. Novel ligation dependent PCR assay for detection of hepatitis C in serum.

32. Nilsson, M.; Antson, D.O.; Barbany, G.; Landgren, U. RNA templated DNA ligation for transcript analysis. Nucleic Acids Res. 2001, 29, 578-581. 40.

33. Deng, J.Y.; Zhang, X.E.; Mang, Y.; Zhang, Z.P.; Zhou, Y.F.; Liu, Q.; Lu, H.B.; Fu, Z.J. Oligonucleotide ligation assay based DNA chip for multiplex detection of single nucleotide polymorphism. Biosens. Bioelectron. 2004, 19, 41. 1277-1283.

34. Park, Y.N.; Abe, K.; Li, H.; Hsuih, T.; Thung, S.N.; Zhang, D.Y. Detection of hepatitis C virus RNA using ligation dependent polymerase chain reaction in formalin fixed paraffin embedded liver tissues. Am. J. Pathol. 1996, 149, 1485-1491.

Gunderson, K.L.; Huang, X.C.; Morris, M.S.; Lipshutz, R.J.; Lockhart, D.J.; Chee, M.S. Mutation detection by ligation to complete n-mer DNA arrays. Genome Res. 1998, 8, 1142-1153.

Busti, E.; Bordoni, R.; Castiglioni, B.; Monciardini, P.; Sosio, M.; Donadio, S.; Consolandi, C.; Bernardi, L.R.; Battaglia, C.; De Bellis, G. Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction). BMC Microbiol. 2002, 2, 27.

Mikhailovich, V.; Lapa, S.; Gryadunov, D.; Sobolev, A.; Strizhkov, B.; et al. Identification of rifampin resistant Mycobacterium tuberculosis strains by hybridisation, PCR, and ligase detection reaction on oligonucleotide microchips. J. Clin. Microbiol. 2001, 39, 2531-2540. Delrio-Lafreniere, S.A.; Browning, M.K.; McGlennen, R.C. Low density addressable array for the detection and typing of the human papillomavirus. Diagn. Microbiol. Infect. Dis. 2004, 48, 23-31.

Favis, R.; Barany, F. Mutation detection in K-ras, BRCA1, BRCA2 and p53 using PCR/LDR and a universal DNA microarray. Ann. N.Y. Acad. Sci. 2000, 906, 39-43. Favis, R.; Day, J.; Gerry, N.P.; Phelan, C.; Narod, S.A.; Barany, F. Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nat. Biotechnol. 2000, 18, 561-564.

Fouquet, C.; Antoine, M.; Tisserand, P.; Favis, R.; Wislez, M.; Commo, F.; Rabbe, N.; Carette, M.F.; Milleron, B.M.; Barany, F.; Cadranel, J.; Zalcman, G.; Soussi, T. Rapid and sensitive p53 alteration analysis in biopsies from lung cancer patients using a functional assay and a universal oligonucleotide array: A prospective study. Clin. Cancer Res. 2004, 10, 3479-3489.

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Getting Started With Dumbbells

Getting Started With Dumbbells

The use of dumbbells gives you a much more comprehensive strengthening effect because the workout engages your stabilizer muscles, in addition to the muscle you may be pin-pointing. Without all of the belts and artificial stabilizers of a machine, you also engage your core muscles, which are your body's natural stabilizers.

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